Rapid match-searching for gene silencing assessment
نویسندگان
چکیده
منابع مشابه
Rapid match-searching for gene silencing assessment
MOTIVATION Gene silencing, also called RNA interference, requires reliable assessment of silencer impacts. A critical task is to find matches between silencer oligomers and sites in the genome, in accordance with one-to-many matching rules (G-U matching, with provision for mismatches). Fast search algorithms are required to support silencer impact assessments in procedures for designing effecti...
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Ziv-Lempel coding is currently one of the more practical data compression schemes. It operates by replacing a substring of a text with a pointer to its longest previous occurrence in the input, for each coding step. Decoding a compressed le is very fast, but encoding involves searching at each coding step to nd the longest match for the next few characters. This paper presents eight data struct...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2010
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btq318